# Executing the Pipeline

## Installing dependencies

### Packages installed through conda

All the packages installed through anaconda3/2018.12 for Python 3.9.5 are described (add_link and file)

### Packages installed through pip

All the python packages installed for python version 3.9.5 ( and with R version 4.1.0) are described (add_link and file)

## Setting up profiles

The info for setting up profiles for different workload managers is mentioned [here](https://github.com/Snakemake-Profiles)

## Executing Pipeline

This pipeline can be executed by executing (in case of any workflow manager, submitting) the script called `run_snakemake.sh`

```sh
sh run_snakemake.sh
```