Salient Features
Streamlined
The pipeline’s heart is the new_config.yaml file, which contains all modifiable properties of the software used in one place. For more info on this file, go here.
Maintaining project structure
Another prominent feature of this pipeline is the ability to capture folder structure of the fastqs and provide the ability to organize the outputs of various programs in a similar (with varying structures but using all wildcards) manner. To understand this ability more go here.
Easy modification or addition of rules
To modify rules (adding extra params) is easy (add_here the extra params option in STARsolo )
One-select running of popular workflows
Many pre-selected workflows are present in the pipeline