Executing the Pipeline
Installing dependencies
Packages installed through conda
All the packages installed through anaconda3/2018.12 for Python 3.9.5 are described (add_link and file)
Packages installed through pip
All the python packages installed for python version 3.9.5 ( and with R version 4.1.0) are described (add_link and file)
Setting up profiles
The info for setting up profiles for different workload managers is mentioned here
Executing Pipeline
This pipeline can be executed by executing (in case of any workflow manager, submitting) the script called run_snakemake.sh
sh run_snakemake.sh