Executing the Pipeline

Installing dependencies

Packages installed through conda

All the packages installed through anaconda3/2018.12 for Python 3.9.5 are described (add_link and file)

Packages installed through pip

All the python packages installed for python version 3.9.5 ( and with R version 4.1.0) are described (add_link and file)

Setting up profiles

The info for setting up profiles for different workload managers is mentioned here

Executing Pipeline

This pipeline can be executed by executing (in case of any workflow manager, submitting) the script called run_snakemake.sh

sh run_snakemake.sh