create_h5ad_from_calico_solo module

Create an h5ad file from the outputs of a hashsolo run

This script runs hashsolo given an h5ad file containing hashing counts (usually obtained by using sofwatre like bustools count), matrix file containing gene counts, and a genes annotation file to produce an h5ad file.

Note

More often than not the hashing counts file may have lesser barcodes in them as compared to the gene counts file and thus one should expect, at max, the number of barcodes retained in the hasing counts file.

get_argument_parser()

Generate and return argument parser.

main()