create_inp_cellSNP module

Creates a list of effective barcodes for cellSNP run.

This script takes a count matrix as an input and creates a list of ‘effective’ barcodes, dependent on the condition if some cells should be removed or not (e.g. if already a demultiplexing tool was run with an h5ad column containing classifications and if some of the cells that have been classified as a doublet and/or negative cells have to be removed then too this script can be used).

get_argument_parser()

Generate and return argument parser.

int_or_none(val)

main()

Main function

string_or_none(val)